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Crystal Structure of the C-terminal Domain of S. cerevisiae eIF5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 277 2.8M (NH4)2SO4, 0.1M MES pH6.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.48 50.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.849 α = 88.6 b = 64.536 β = 86.57 c = 108.916 γ = 74.93
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9794 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 92.8 0.044 25 3.5 173580
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 68.9 0.245 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 50 173578 8647 92.35 0.178 0.177 0.1749 0.205 0.2043 RANDOM 18.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.03 0.13 -0.15 0.16 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.621 r_dihedral_angle_4_deg 24.49 r_dihedral_angle_3_deg 12.628 r_dihedral_angle_1_deg 4.915 r_scangle_it 2.607 r_scbond_it 1.724 r_angle_refined_deg 1.204 r_mcangle_it 1.009 r_mcbond_it 0.63 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.621 r_dihedral_angle_4_deg 24.49 r_dihedral_angle_3_deg 12.628 r_dihedral_angle_1_deg 4.915 r_scangle_it 2.607 r_scbond_it 1.724 r_angle_refined_deg 1.204 r_mcangle_it 1.009 r_mcbond_it 0.63 r_nbtor_refined 0.311 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.125 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7829 Nucleic Acid Atoms Solvent Atoms 916 Heterogen Atoms 100
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SHARP phasing