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crystal structure of papaya glutaminyl cyclase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 85 mM Tris-HCl, 0.17 M sodium acetate, 25% PEG 4000, 15% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.82 α = 90 b = 81.2 β = 90 c = 108.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD toroidal focussing mirror 2004-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.953718, 1.77122 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 19.537 99.9 0.06 41.6 28.9 61500 61500
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 100 0.279 15.3 29.3 9594
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 19.537 61499 3075 100 0.167 0.165 0.1647 0.208 0.2047 RANDOM 23.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.89 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.815 r_scangle_it 3.027 r_scbond_it 2.015 r_angle_refined_deg 1.933 r_sphericity_free 1.897 r_sphericity_bonded 1.797 r_mcangle_it 1.484 r_rigid_bond_restr 0.986 r_mcbond_it 0.889 r_nbd_refined 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.815 r_scangle_it 3.027 r_scbond_it 2.015 r_angle_refined_deg 1.933 r_sphericity_free 1.897 r_sphericity_bonded 1.797 r_mcangle_it 1.484 r_rigid_bond_restr 0.986 r_mcbond_it 0.889 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.223 r_symmetry_hbond_refined 0.212 r_xyhbond_nbd_refined 0.181 r_chiral_restr 0.078 r_bond_refined_d 0.02 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4124 Nucleic Acid Atoms Solvent Atoms 897 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SCALE data reduction XDS data scaling SHARP phasing