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Crystal Structure Of The Human P21-Activated Kinase 5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C30 PDB ID 2C30
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 0.2M Na/KPO4, 0.1M BTProp 7.5, 20% PEG3350, 10% Ethelene glycol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.26 45.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.661 α = 90 b = 56.599 β = 103.13 c = 120.764 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9788 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.4 60040
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ID 2C30 1.8 50 56997 56997 3031 99.39 0.15525 0.15525 0.15363 0.1625 0.18513 0.1918 RANDOM 15.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.8 0.99 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.933 r_dihedral_angle_4_deg 16.633 r_dihedral_angle_3_deg 11.337 r_scangle_it 6.836 r_dihedral_angle_1_deg 5.257 r_scbond_it 5.206 r_mcangle_it 3.31 r_mcbond_it 2.488 r_angle_refined_deg 1.226 r_angle_other_deg 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.933 r_dihedral_angle_4_deg 16.633 r_dihedral_angle_3_deg 11.337 r_scangle_it 6.836 r_dihedral_angle_1_deg 5.257 r_scbond_it 5.206 r_mcangle_it 3.31 r_mcbond_it 2.488 r_angle_refined_deg 1.226 r_angle_other_deg 0.88 r_mcbond_other 0.755 r_symmetry_vdw_other 0.265 r_nbd_refined 0.204 r_nbd_other 0.191 r_symmetry_hbond_refined 0.191 r_nbtor_refined 0.171 r_xyhbond_nbd_refined 0.151 r_symmetry_vdw_refined 0.129 r_nbtor_other 0.083 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4687 Nucleic Acid Atoms Solvent Atoms 613 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing