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Crystal structure of an ob-fold protein (tm0957) from thermotoga maritima msb8 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 277 0.2M MgCl2, 30.0% PEG-4000, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.41 48.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.677 α = 90 b = 78.075 β = 93.4 c = 82.487 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD ADJUSTABLE FOCUSING MIRRORS IN K-B GEOMETRY 2005-08-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97942, 0.95372 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 29.83 100 0.09 0.09 5.8 3.8 39599
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 100 0.3 2.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 29.83 37581 1987 99.8 0.193 0.19279 0.19 0.1949 0.248 0.2502 RANDOM 15.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -0.16 0.79 -1.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.041 r_dihedral_angle_3_deg 16.485 r_dihedral_angle_4_deg 15.295 r_dihedral_angle_1_deg 5.912 r_mcangle_it 2.336 r_mcbond_it 1.707 r_scangle_it 1.611 r_angle_refined_deg 1.562 r_scbond_it 1.169 r_angle_other_deg 1.039
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.041 r_dihedral_angle_3_deg 16.485 r_dihedral_angle_4_deg 15.295 r_dihedral_angle_1_deg 5.912 r_mcangle_it 2.336 r_mcbond_it 1.707 r_scangle_it 1.611 r_angle_refined_deg 1.562 r_scbond_it 1.169 r_angle_other_deg 1.039 r_mcbond_other 0.38 r_symmetry_vdw_other 0.267 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.195 r_nbd_other 0.19 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.175 r_metal_ion_refined 0.101 r_chiral_restr 0.095 r_xyhbond_nbd_other 0.091 r_nbtor_other 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5639 Nucleic Acid Atoms Solvent Atoms 484 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELX phasing autoSHARP phasing