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Triclinic cross-linked Lysozyme soaked with 4.5M urea
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F2N PDB ENTRY 2F2N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 300 sodium nitrate as crystallizing agent
cross-linked by vapor diffusion with glutaraldehyde, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 1.81 31.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.11 α = 88.15 b = 31.94 β = 108.62 c = 34.17 γ = 111.73
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MARRESEARCH Si(111) curvated mirror 2002-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 0.964 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 15.3 98.4 0.039 0.03 28.3 3.5 11365 11365 2 4 12.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.7 85.6 0.195 0.182 18 3 898
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS PDB ENTRY 2F2N 1.65 10 4 2 11319 11189 533 94.1 0.1694 0.1564 0.15 0.1417 0.191 0.1448 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 1086
RMS Deviations Key Refinement Restraint Deviation s_from_restr_planes 0.309 s_anti_bump_dis_restr 0.135 s_non_zero_chiral_vol 0.055 s_zero_chiral_vol 0.054 s_angle_d 0.023 s_bond_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXL refinement SFALL phasing