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Triclinic hen egg lysozyme cross-linked by glutaraldehyde
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LZT PDB ENTRY 3LZT, 1LKS experimental model PDB 1LKS PDB ENTRY 3LZT, 1LKS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 300 sodium nitrate, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 1.81 32.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.17 α = 88.67 b = 31.84 β = 108.32 c = 34.22 γ = 111.87
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MARRESEARCH 2000-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 0.974 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.603 8.7 93.55 0.045 0.043 32.01 4.3 12253 12315 2 4 12.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.603 1.7 87.84 0.174 0.168 17.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R PDB ENTRY 3LZT, 1LKS 1.603 8 12315 12253 725 93.9 0.1379 0.1375 0.1368 0.1691 0.162 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 954 1179
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.066 s_similar_adp_cmpnt 0.05 s_zero_chiral_vol 0.049 s_angle_d 0.026 s_from_restr_planes 0.0257 s_anti_bump_dis_restr 0.019 s_bond_d 0.01 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 28
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX model building SHELXL-97 refinement DENZO data reduction SCALEPACK data scaling