☰ Navigation Tabs
The crystal structure of probable transcriptional regulator PA0477 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 10% PEG6K. 5%MPD, 0.1MHepes-Na pH7.5
20mM imidazole, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.62 53.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.035 α = 90 b = 171.209 β = 90 c = 86.78 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2005-06-21 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.978959 APS 19-BM 2 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 50 97.14 0.064 35 7.2 79899 79899 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.18 94.47 0.696 2.6 6.7 5684
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 50 79899 79899 2466 97.14 0.19549 0.19549 0.19371 0.1929 0.25117 0.2499 RANDOM 44.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.67 -1.44 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.882 r_dihedral_angle_4_deg 20.45 r_dihedral_angle_3_deg 18.619 r_dihedral_angle_1_deg 7.639 r_scangle_it 5.03 r_scbond_it 3.309 r_mcangle_it 2.079 r_angle_refined_deg 1.919 r_mcbond_it 1.231 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.882 r_dihedral_angle_4_deg 20.45 r_dihedral_angle_3_deg 18.619 r_dihedral_angle_1_deg 7.639 r_scangle_it 5.03 r_scbond_it 3.309 r_mcangle_it 2.079 r_angle_refined_deg 1.919 r_mcbond_it 1.231 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.243 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.202 r_symmetry_hbond_refined 0.179 r_chiral_restr 0.149 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9350 Nucleic Acid Atoms Solvent Atoms 770 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SnB phasing