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Human Cyclophilin C in Complex with Cyclosporin A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 25% PEG550 MME, 10MM ZINC ACETATE, 100MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K
Crystal Properties Matthews coefficient Solvent content 2.31 46.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.203 α = 90 b = 123.802 β = 90 c = 135.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2005-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 36.4 98.6 0.078 25.5 7 95283 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 97.8 0.515 3.68 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 36.4 90042 4733 98.6 0.18 0.178 0.225 0.2139 RANDOM 26.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 -1.46 2.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.363 r_dihedral_angle_4_deg 19.054 r_dihedral_angle_3_deg 13.992 r_dihedral_angle_1_deg 6.265 r_scangle_it 4.92 r_scbond_it 3.349 r_mcangle_it 2.597 r_mcbond_it 1.726 r_angle_refined_deg 1.373 r_metal_ion_refined 0.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.363 r_dihedral_angle_4_deg 19.054 r_dihedral_angle_3_deg 13.992 r_dihedral_angle_1_deg 6.265 r_scangle_it 4.92 r_scbond_it 3.349 r_mcangle_it 2.597 r_mcbond_it 1.726 r_angle_refined_deg 1.373 r_metal_ion_refined 0.338 r_nbtor_refined 0.321 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.197 r_symmetry_metal_ion_refined 0.164 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.096 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8826 Nucleic Acid Atoms Solvent Atoms 798 Heterogen Atoms 35
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling