☰ Navigation Tabs
Crystal structure of TACE in complex with TAPI-2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BKC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 295 15% PEG 6K, 10% 2-PROPANOL, 100 MM
SODIUM CITRATE BUFFER , pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.51 50.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.394 α = 90 b = 75.639 β = 90 c = 103.713 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 IMAGE PLATE RIGAKU RAXIS IV 2005-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 97.2 65325 63496
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BKC 1.7 20 65325 63552 1259 97.79 0.204 0.204 0.204 0.2128 0.23 0.1959 RANDOM 37.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 -0.4 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.002 r_dihedral_angle_4_deg 13.083 r_dihedral_angle_3_deg 11.987 r_dihedral_angle_1_deg 6.07 r_scangle_it 3.43 r_scbond_it 2.418 r_mcangle_it 1.616 r_angle_refined_deg 1.34 r_mcbond_it 1.072 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.002 r_dihedral_angle_4_deg 13.083 r_dihedral_angle_3_deg 11.987 r_dihedral_angle_1_deg 6.07 r_scangle_it 3.43 r_scbond_it 2.418 r_mcangle_it 1.616 r_angle_refined_deg 1.34 r_mcbond_it 1.072 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.206 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.136 r_metal_ion_refined 0.095 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3892 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction