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Subunit F of V-type ATPase/synthase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 PEG 400, calcium acetate, potassium chloride, MES, MOPS, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.59 53.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.705 α = 90 b = 138.295 β = 90 c = 66.096 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-03 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2003-11-13 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9790 SLS X06SA 2 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9794, 0.9796, 0.9724 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.2 26 99.6 38602 38602
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.2 2.28 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 25 37320 1206 100 0.21403 0.2229 0.26221 0.2681 RANDOM 64.158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 -0.99 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.67 r_dihedral_angle_3_deg 18.547 r_dihedral_angle_4_deg 17.206 r_dihedral_angle_1_deg 8.779 r_scangle_it 5.313 r_scbond_it 3.412 r_angle_refined_deg 2.492 r_mcangle_it 2.065 r_mcbond_it 1.458 r_angle_other_deg 1.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.67 r_dihedral_angle_3_deg 18.547 r_dihedral_angle_4_deg 17.206 r_dihedral_angle_1_deg 8.779 r_scangle_it 5.313 r_scbond_it 3.412 r_angle_refined_deg 2.492 r_mcangle_it 2.065 r_mcbond_it 1.458 r_angle_other_deg 1.109 r_mcbond_other 0.387 r_xyhbond_nbd_other 0.373 r_symmetry_hbond_refined 0.314 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.273 r_xyhbond_nbd_refined 0.271 r_nbd_other 0.222 r_symmetry_vdw_other 0.211 r_nbtor_refined 0.196 r_chiral_restr 0.148 r_metal_ion_refined 0.134 r_nbtor_other 0.103 r_bond_refined_d 0.033 r_symmetry_metal_ion_refined 0.024 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.003 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4998 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing