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a putative acyl carrier protein(Rv0033) from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T8K PDB ENTRY 1T8K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1M BIS-TRIS PH6.5, 0.2M NACL, 25%(W/V)PEG3350, pH 6.50
Crystal Properties Matthews coefficient Solvent content 1.8 31.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.222 α = 90 b = 45.222 β = 90 c = 78.152 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRROR 2005-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 39.16 98.8 0.03 35.74 6.25 8555
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.95 96.4 0.2 9.19 5.54
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1T8K 1.83 39.16 7690 829 99.9 0.182 0.179 0.1893 0.217 0.2403 RANDOM 26.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.3 0.59 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.454 r_dihedral_angle_4_deg 21.039 r_dihedral_angle_3_deg 12.242 r_dihedral_angle_1_deg 5.286 r_scangle_it 3.65 r_scbond_it 2.625 r_angle_refined_deg 1.533 r_mcangle_it 1.459 r_mcbond_it 1.23 r_angle_other_deg 0.859
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.454 r_dihedral_angle_4_deg 21.039 r_dihedral_angle_3_deg 12.242 r_dihedral_angle_1_deg 5.286 r_scangle_it 3.65 r_scbond_it 2.625 r_angle_refined_deg 1.533 r_mcangle_it 1.459 r_mcbond_it 1.23 r_angle_other_deg 0.859 r_symmetry_vdw_other 0.362 r_mcbond_other 0.322 r_symmetry_hbond_refined 0.256 r_nbd_refined 0.226 r_xyhbond_nbd_refined 0.221 r_nbtor_refined 0.182 r_nbd_other 0.164 r_symmetry_vdw_refined 0.142 r_chiral_restr 0.088 r_nbtor_other 0.083 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 589 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CaspR phasing