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Sulfite dehydrogenase from Starkeya Novella r55m mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BLF PDB ENTRY 2BLF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 0.1M HEPES PH 7.4, 2.2M AMMONIUM SULFATE, 2% PEG200
Crystal Properties Matthews coefficient Solvent content 2.6 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.654 α = 90 b = 93.321 β = 90 c = 56.035 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.2 0.095 14.3 3.8 34463
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 89.1 0.29 3.8 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BLF 2 20 32619 1759 97.9 0.163 0.161 0.206 RANDOM 21.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.93 1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.377 r_dihedral_angle_4_deg 16.523 r_dihedral_angle_3_deg 12.637 r_dihedral_angle_1_deg 6.17 r_scangle_it 5.836 r_mcangle_it 4.571 r_scbond_it 4.557 r_mcbond_it 3.8 r_angle_refined_deg 1.395 r_symmetry_hbond_refined 0.408
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.377 r_dihedral_angle_4_deg 16.523 r_dihedral_angle_3_deg 12.637 r_dihedral_angle_1_deg 6.17 r_scangle_it 5.836 r_mcangle_it 4.571 r_scbond_it 4.557 r_mcbond_it 3.8 r_angle_refined_deg 1.395 r_symmetry_hbond_refined 0.408 r_nbtor_refined 0.305 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3452 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling