☰ Navigation Tabs
Sulfite dehydrogenase from Starkeya Novella Y236F mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BLF PDB ENTRY 2BLF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 0.1M HEPES PH 7.4, 2.2M AMMONIUM SULFATE, 2% PEG200
Crystal Properties Matthews coefficient Solvent content 2.6 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.323 α = 90 b = 93.214 β = 90 c = 56.136 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 96.8 0.11 14.5 6.2 46488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 82.1 0.6 2.2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BLF 1.8 20 44052 2342 96.6 0.168 0.166 0.1652 0.209 0.2067 RANDOM 17.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.48 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.511 r_dihedral_angle_4_deg 13.179 r_dihedral_angle_3_deg 12.677 r_scangle_it 9.125 r_scbond_it 6.677 r_dihedral_angle_1_deg 6.196 r_mcangle_it 4.365 r_mcbond_it 3.246 r_angle_refined_deg 1.391 r_symmetry_hbond_refined 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.511 r_dihedral_angle_4_deg 13.179 r_dihedral_angle_3_deg 12.677 r_scangle_it 9.125 r_scbond_it 6.677 r_dihedral_angle_1_deg 6.196 r_mcangle_it 4.365 r_mcbond_it 3.246 r_angle_refined_deg 1.391 r_symmetry_hbond_refined 0.341 r_nbtor_refined 0.301 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.195 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3454 Nucleic Acid Atoms Solvent Atoms 421 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling