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3D Structure of the human RuvB-like helicase RuvBL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 PROTEIN WAS CRYSTALLISED USING THE VAPOR DIFFUSION METHOD (SITTING DROP). THE WELLS CONTAINED 500 MICROLITERS OF PRECIPITANT SOLUTION AND THE DROPS WERE COMPOSED OF 1.5 MICROLITERS OF PROTEIN SOLUTION (15 MG/ML) AND 1.5 MICROLITERS OF RESERVOIR SOLUTION. THE BEST CRYSTALS WERE OBTAINED FROM A SOLUTION CONTAINING 1.6 M SODIUM MALONATE PH 6 AT 293 K.
Crystal Properties Matthews coefficient Solvent content 3.09 59.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 207.08 α = 90 b = 207.08 β = 90 c = 60.71 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 45.4 96.5 0.07 8.1 8.3 73593
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 80 0.62 1.2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 179.61 70028 3705 97.1 0.209 0.206 0.257 0.3015 RANDOM 46.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 0.28 0.55 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.709 r_dihedral_angle_4_deg 19.872 r_dihedral_angle_3_deg 16.104 r_dihedral_angle_1_deg 5.958 r_scangle_it 3.011 r_scbond_it 1.995 r_angle_refined_deg 1.5 r_mcangle_it 1.165 r_mcbond_it 0.972 r_angle_other_deg 0.804
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.709 r_dihedral_angle_4_deg 19.872 r_dihedral_angle_3_deg 16.104 r_dihedral_angle_1_deg 5.958 r_scangle_it 3.011 r_scbond_it 1.995 r_angle_refined_deg 1.5 r_mcangle_it 1.165 r_mcbond_it 0.972 r_angle_other_deg 0.804 r_nbd_refined 0.197 r_symmetry_vdw_other 0.192 r_symmetry_hbond_refined 0.185 r_nbd_other 0.179 r_nbtor_refined 0.171 r_mcbond_other 0.164 r_xyhbond_nbd_refined 0.161 r_symmetry_vdw_refined 0.135 r_nbtor_other 0.087 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8467 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 81
Software Software Software Name Purpose SHARP model building SCALA data scaling SHELXCD phasing SHELXD phasing SHELXE phasing SHARP phasing REFMAC refinement