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GDP COMPLEX OF SRP GTPASE FFH NG DOMAIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FFH PDB ENTRY 1FFH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 30% DIOXANE, 2MM GDP
Crystal Properties Matthews coefficient Solvent content 1.5 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.59 α = 90 b = 55.11 β = 101.73 c = 96.11 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 1998-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.24 50 94.6 0.063 12.5 3.6 154602 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.24 1.27 96.1 0.47 2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FFH 1.24 19.96 124748 9640 87 0.138 0.134 0.1396 0.184 0.1882 RANDOM 21.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.01 0.52 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.563 r_dihedral_angle_4_deg 17.657 r_dihedral_angle_3_deg 12.23 r_scangle_it 12.044 r_scbond_it 9.868 r_mcangle_it 5.662 r_dihedral_angle_1_deg 5.519 r_mcbond_it 5.084 r_mcbond_other 1.881 r_angle_refined_deg 1.396
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.563 r_dihedral_angle_4_deg 17.657 r_dihedral_angle_3_deg 12.23 r_scangle_it 12.044 r_scbond_it 9.868 r_mcangle_it 5.662 r_dihedral_angle_1_deg 5.519 r_mcbond_it 5.084 r_mcbond_other 1.881 r_angle_refined_deg 1.396 r_angle_other_deg 0.802 r_symmetry_vdw_other 0.271 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.218 r_nbd_other 0.184 r_xyhbond_nbd_refined 0.176 r_symmetry_hbond_refined 0.171 r_nbtor_refined 0.17 r_nbtor_other 0.081 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4559 Nucleic Acid Atoms Solvent Atoms 631 Heterogen Atoms 152
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing