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Crystal structure of the UBA domain of Dsk2 from S. cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.6 M TRISODIUM CITRATE PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.4 48.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.311 α = 90 b = 44.069 β = 114.87 c = 111.525 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.5 99.9 0.09 16.4 4 23134 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.28 3.8 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 101.02 22007 1127 99.8 0.246 0.243 0.299 0.307 0.3667 RANDOM 72.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.928 r_dihedral_angle_3_deg 19.544 r_dihedral_angle_4_deg 17.23 r_dihedral_angle_1_deg 8.997 r_scangle_it 1.151 r_angle_refined_deg 1.15 r_angle_other_deg 0.828 r_scbond_it 0.741 r_mcangle_it 0.422 r_mcbond_it 0.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.928 r_dihedral_angle_3_deg 19.544 r_dihedral_angle_4_deg 17.23 r_dihedral_angle_1_deg 8.997 r_scangle_it 1.151 r_angle_refined_deg 1.15 r_angle_other_deg 0.828 r_scbond_it 0.741 r_mcangle_it 0.422 r_mcbond_it 0.357 r_symmetry_vdw_other 0.243 r_symmetry_vdw_refined 0.229 r_symmetry_hbond_refined 0.205 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.193 r_nbd_other 0.173 r_nbtor_refined 0.17 r_nbtor_other 0.087 r_chiral_restr 0.062 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3187 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing