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Crystal structure of a ternary complex of the human histone methyltransferase Pr-SET7 (also known as SET8)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.00
Crystal Properties Matthews coefficient Solvent content 1.9 34.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.179 α = 64.74 b = 46.322 β = 86.66 c = 51.998 γ = 90.61
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.9 89.1 0.07 9.5 4.3 63273 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.5 20 50828 2663 94 0.188 0.187 0.206 RANDOM 13.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 0.58 -0.1 -1.87 0.41 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.125 r_dihedral_angle_1_deg 4.432 r_scangle_it 3.299 r_scbond_it 2.112 r_mcangle_it 1.58 r_angle_refined_deg 1.579 r_mcbond_it 0.893 r_angle_other_deg 0.722 r_symmetry_vdw_other 0.352 r_nbd_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.125 r_dihedral_angle_1_deg 4.432 r_scangle_it 3.299 r_scbond_it 2.112 r_mcangle_it 1.58 r_angle_refined_deg 1.579 r_mcbond_it 0.893 r_angle_other_deg 0.722 r_symmetry_vdw_other 0.352 r_nbd_refined 0.322 r_symmetry_vdw_refined 0.267 r_symmetry_hbond_refined 0.258 r_nbd_other 0.229 r_xyhbond_nbd_refined 0.211 r_nbtor_other 0.139 r_chiral_restr 0.094 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2774 Nucleic Acid Atoms Solvent Atoms 613 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling