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STRUCTURE OF MURINE DECTIN-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BPD PDB ENTRY 2BPD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 2M SODIUM CHLORIDE, 0.1M SODIUM ACETATE PH4.6, pH 4.60
Crystal Properties Matthews coefficient Solvent content 3.77 67.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.685 α = 90 b = 84.685 β = 90 c = 117.686 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD SAGITALLY FOCUSING GE(220) AND A MULTILAYER 2004-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 30 96.4 0.09 24.8 11.1 22768 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 76.9 0.86 1.2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BPD 2.25 73.32 21569 1165 96.3 0.19 0.188 0.1871 0.231 RANDOM 38.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.06 -0.12 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.77 r_dihedral_angle_4_deg 18.141 r_dihedral_angle_3_deg 16.353 r_dihedral_angle_1_deg 7.746 r_scangle_it 3.024 r_scbond_it 1.97 r_mcangle_it 1.523 r_angle_refined_deg 1.521 r_mcbond_it 0.86 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.77 r_dihedral_angle_4_deg 18.141 r_dihedral_angle_3_deg 16.353 r_dihedral_angle_1_deg 7.746 r_scangle_it 3.024 r_scbond_it 1.97 r_mcangle_it 1.523 r_angle_refined_deg 1.521 r_mcbond_it 0.86 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.272 r_symmetry_hbond_refined 0.243 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2086 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CaspR phasing AMoRE phasing REFMAC refinement