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Dissection of mannosylglycerate synthase: an archetypal mannosyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.3 M TRI-SODIUM CITRATE, 0.1 M SODIUM ACETATE TRIHYDRATE, PH 4.6, 40% (V/V) MPD
Crystal Properties Matthews coefficient Solvent content 5.5 79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 261.148 α = 90 b = 151.288 β = 90.41 c = 153.24 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 40 97 0.07 15 3 432716 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 90 0.51 1.6 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 20 392971 20759 95.7 0.177 0.176 0.1866 0.192 0.2015 RANDOM 18.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.482 r_scangle_it 2.962 r_scbond_it 1.785 r_angle_refined_deg 1.232 r_mcangle_it 1.076 r_angle_other_deg 0.851 r_mcbond_it 0.535 r_symmetry_vdw_other 0.325 r_symmetry_vdw_refined 0.246 r_nbd_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.482 r_scangle_it 2.962 r_scbond_it 1.785 r_angle_refined_deg 1.232 r_mcangle_it 1.076 r_angle_other_deg 0.851 r_mcbond_it 0.535 r_symmetry_vdw_other 0.325 r_symmetry_vdw_refined 0.246 r_nbd_other 0.243 r_nbd_refined 0.207 r_symmetry_hbond_refined 0.201 r_chiral_restr 0.178 r_xyhbond_nbd_refined 0.173 r_nbtor_other 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18824 Nucleic Acid Atoms Solvent Atoms 1767 Heterogen Atoms 78
Software Software Software Name Purpose HKL data reduction HKL data scaling SHELX phasing SOLVE phasing REFMAC refinement