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Human plasminogen activator inhibitor-2.[loop (66-98) deletion mutant] complexed with peptide n-acetyl-teaaagdggvmtgr-oh
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JRR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 PEG 8K, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.25 45.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.562 α = 90 b = 104.126 β = 90 c = 41.438 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAC Science DIP-2030 MIRRORS 1999-10-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR571 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 14.8 96.2 0.069 0.069 15.2 3.9 33539 33539 24.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 98.1 0.417 0.417 2.1 3.2 3330
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1JRR 1.85 14.8 32455 32455 1061 95.91 0.18469 0.18469 0.18246 0.1937 0.24822 0.1931 RANDOM 22.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -1.28 1.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.475 r_dihedral_angle_4_deg 22.532 r_dihedral_angle_3_deg 13.019 r_dihedral_angle_1_deg 6.328 r_scangle_it 3.999 r_scbond_it 2.888 r_mcangle_it 1.844 r_angle_refined_deg 1.708 r_mcbond_it 1.524 r_angle_other_deg 0.875
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.475 r_dihedral_angle_4_deg 22.532 r_dihedral_angle_3_deg 13.019 r_dihedral_angle_1_deg 6.328 r_scangle_it 3.999 r_scbond_it 2.888 r_mcangle_it 1.844 r_angle_refined_deg 1.708 r_mcbond_it 1.524 r_angle_other_deg 0.875 r_mcbond_other 0.323 r_symmetry_vdw_other 0.305 r_nbd_refined 0.21 r_nbd_other 0.192 r_xyhbond_nbd_refined 0.181 r_nbtor_refined 0.179 r_symmetry_hbond_refined 0.141 r_symmetry_vdw_refined 0.137 r_chiral_restr 0.106 r_nbtor_other 0.088 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2969 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing