☰ Navigation Tabs
Formylglycine generating enzyme C336S mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y1I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 PEG 4000, Calcium chloride, TRIS, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.25 45.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.786 α = 90 b = 109.514 β = 90 c = 43.425 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 30 95.6 0.063 17.5 3.5 34103 17.97
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.72 63.7 0.45 1.5 1.7 2228
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1y1i 1.66 25.17 32406 1649 96.14 0.15102 0.14924 0.1568 0.18661 0.1958 RANDOM 19.579
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.49 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.493 r_dihedral_angle_4_deg 17.251 r_dihedral_angle_3_deg 12.654 r_dihedral_angle_1_deg 6.421 r_scangle_it 2.943 r_scbond_it 1.925 r_angle_refined_deg 1.372 r_mcangle_it 1.338 r_mcbond_it 0.902 r_angle_other_deg 0.828
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.493 r_dihedral_angle_4_deg 17.251 r_dihedral_angle_3_deg 12.654 r_dihedral_angle_1_deg 6.421 r_scangle_it 2.943 r_scbond_it 1.925 r_angle_refined_deg 1.372 r_mcangle_it 1.338 r_mcbond_it 0.902 r_angle_other_deg 0.828 r_mcbond_other 0.221 r_symmetry_hbond_refined 0.215 r_nbd_refined 0.211 r_nbd_other 0.194 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_other 0.188 r_nbtor_refined 0.186 r_symmetry_vdw_refined 0.125 r_chiral_restr 0.086 r_nbtor_other 0.084 r_metal_ion_refined 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling