1CO6

CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5CYT 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5CRYSTALS WERE GROWN FROM AN AMMONIUM SULFATE SOLUTION AT PH 8.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.3757.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.13α = 90
b = 76.13β = 90
c = 40.4γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray291DIFFRACTOMETERWEISSENBERG1994-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6APhoton FactoryBL-6A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.62089.10.0721161661

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT5CYT1.6611501485.20.182
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor18.9
p_transverse_tor15
p_scangle_it3.481
p_planar_tor2.4
p_scbond_it2.267
p_mcangle_it1.696
p_mcbond_it1.131
p_multtor_nbd0.226
p_xyhbond_nbd0.223
p_singtor_nbd0.176
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor18.9
p_transverse_tor15
p_scangle_it3.481
p_planar_tor2.4
p_scbond_it2.267
p_mcangle_it1.696
p_mcbond_it1.131
p_multtor_nbd0.226
p_xyhbond_nbd0.223
p_singtor_nbd0.176
p_chiral_restr0.141
p_planar_d0.044
p_angle_d0.037
p_bond_d0.015
p_plane_restr0.014
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms821
Nucleic Acid Atoms
Solvent Atoms145
Heterogen Atoms43

Software

Software
Software NamePurpose
PHASERphasing
PROLSQrefinement
WEISdata reduction
PROTEINdata scaling