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CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CYT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 CRYSTALS WERE GROWN FROM AN AMMONIUM SULFATE SOLUTION AT PH 8.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.37 57.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.13 α = 90 b = 76.13 β = 90 c = 40.4 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 DIFFRACTOMETER WEISSENBERG 1994-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 89.1 0.072 1 16166 1
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 5CYT 1.6 6 1 15014 85.2 0.182 0.1942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 18.9 p_transverse_tor 15 p_scangle_it 3.481 p_planar_tor 2.4 p_scbond_it 2.267 p_mcangle_it 1.696 p_mcbond_it 1.131 p_multtor_nbd 0.226 p_xyhbond_nbd 0.223 p_singtor_nbd 0.176
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 18.9 p_transverse_tor 15 p_scangle_it 3.481 p_planar_tor 2.4 p_scbond_it 2.267 p_mcangle_it 1.696 p_mcbond_it 1.131 p_multtor_nbd 0.226 p_xyhbond_nbd 0.223 p_singtor_nbd 0.176 p_chiral_restr 0.141 p_planar_d 0.044 p_angle_d 0.037 p_bond_d 0.015 p_plane_restr 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 821 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 43
Software Software Software Name Purpose PHASER phasing PROLSQ refinement WEIS data reduction PROTEIN data scaling