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Structure of ellipticine in complex with a 6-bp DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 MPD, sodium cacodylate, cobalt hexammine, sodium chloride, potassium chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.62 23.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.86 α = 90 b = 24.86 β = 90 c = 78.86 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARRESEARCH microfocus beamline 2004-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.976 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 16.66 99.6 4436 4420 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.54 99.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 16.66 4197 221 100 0.22 0.2217 0.22041 0.2227 0.24166 0.2559 RANDOM 30.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 0.6 1.19 -1.79
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 8.465 r_sphericity_free 6.374 r_sphericity_bonded 4.197 r_scbond_it 4.089 r_scangle_it 3.053 r_angle_refined_deg 2.505 r_nbtor_refined 0.335 r_xyhbond_nbd_refined 0.215 r_nbd_refined 0.169 r_symmetry_vdw_refined 0.136
RMS Deviations Key Refinement Restraint Deviation r_rigid_bond_restr 8.465 r_sphericity_free 6.374 r_sphericity_bonded 4.197 r_scbond_it 4.089 r_scangle_it 3.053 r_angle_refined_deg 2.505 r_nbtor_refined 0.335 r_xyhbond_nbd_refined 0.215 r_nbd_refined 0.169 r_symmetry_vdw_refined 0.136 r_chiral_restr 0.092 r_symmetry_hbond_refined 0.026 r_gen_planes_refined 0.014 r_bond_refined_d 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 240 Solvent Atoms 27 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement ProDC data collection XDS data scaling AMoRE phasing