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Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S6Z PDB ENTRY 1S6Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 PEG 8000, calcium acetate, sodium chloride, cacodylate, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.13 41.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.926 α = 90 b = 62.464 β = 90 c = 69.385 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV Osmic confocal mirrors 2004-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 94.1 0.05 10 5.1 33947 33847 4 19.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.59 70.2 0.288 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1S6Z 1.5 28.67 36111 33818 3373 93.4 0.175 0.1743 0.206 0.1875 RANDOM 16.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.69 -1.83 3.52
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.9 c_scangle_it 4.29 c_scbond_it 3.05 c_mcangle_it 2.55 c_angle_deg 2 c_mcbond_it 1.83 c_improper_angle_d 1.27 c_bond_d 0.019
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1849 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 1
Software Software Software Name Purpose CNS refinement CRYSTAL data reduction CCP4 data scaling CNS phasing