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Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 291 20% w/v PEG 3000, 0.1M sodium acetate, 0.01M NAD, pH 4.5, modified microbatch, temperature 291K, pH 4.50
Crystal Properties Matthews coefficient Solvent content 2.89 57.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.958 α = 90 b = 82.958 β = 90 c = 189.782 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 50 95 0.089 11111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.67 2.77 61.6 0.294
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 2.8 20 10016 518 100 0.281 0.302 0.311 0.3198 THIN SHELLS 55.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.246 1.623 3.246 -4.869
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.344 r_dihedral_angle_4_deg 22.463 r_dihedral_angle_3_deg 16.832 r_dihedral_angle_1_deg 6.453 r_mcangle_it 3.401 r_scangle_it 2.848 r_mcbond_it 2.651 r_scbond_it 1.949 r_angle_refined_deg 1.343 r_angle_other_deg 0.738
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.344 r_dihedral_angle_4_deg 22.463 r_dihedral_angle_3_deg 16.832 r_dihedral_angle_1_deg 6.453 r_mcangle_it 3.401 r_scangle_it 2.848 r_mcbond_it 2.651 r_scbond_it 1.949 r_angle_refined_deg 1.343 r_angle_other_deg 0.738 r_mcbond_other 0.636 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.221 r_symmetry_vdw_other 0.196 r_nbtor_refined 0.183 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.103 r_nbtor_other 0.089 r_chiral_restr 0.07 r_symmetry_hbond_refined 0.055 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1797 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MolProbity model building