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 1YCY | pdb_00001ycy

Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd1ycyd_ All beta proteins Sm-like fold Sm-like ribonucleoproteins PF1955-like automated matches (Pyrococcus furiosus ) [TaxId: 2261 ], SCOPe (2.08)
Cd1ycyc_ All beta proteins Sm-like fold Sm-like ribonucleoproteins PF1955-like automated matches (Pyrococcus furiosus ) [TaxId: 2261 ], SCOPe (2.08)
Bd1ycyb_ All beta proteins Sm-like fold Sm-like ribonucleoproteins PF1955-like automated matches (Pyrococcus furiosus ) [TaxId: 2261 ], SCOPe (2.08)
Ad1ycya1 All beta proteins Sm-like fold Sm-like ribonucleoproteins PF1955-like Hypothetical protein PF1955 (Pyrococcus furiosus ) [TaxId: 2261 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySm-like ribonucleoproteins 8034368 3000419 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySm-like ribonucleoproteins 8034368 3000419 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySm-like ribonucleoproteins 8034368 3000419 SCOP2B (2022-06-29)
ASCOP2 FamilyPF1955-like 8021988 4001793 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySm-like ribonucleoproteins 8034368 3000419 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DKOW, Ribosomal_L26e1ycyD1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: KOW, Ribosomal_L26ECOD (v295.2)
CKOW, Ribosomal_L26e1ycyC1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: KOW, Ribosomal_L26ECOD (v295.2)
BKOW, Ribosomal_L26e1ycyB1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: KOW, Ribosomal_L26ECOD (v295.2)
Ae1ycyA1 A: beta barrelsX: SH3H: SH3T: SH3F:ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
C2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
B2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
A2.30.30.100 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Conserved hypothetical protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR010920LSM domain superfamilyHomologous Superfamily
A, B, C, D
IPR047575Sm domainDomain