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Crystal structure of the C122S mutant of E. Coli expressed avidin related protein 4 (AVR4)-biotin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 293 2M sodium formate, 0.1M sodium acetate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.97 58.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.173 α = 90 b = 78.173 β = 90 c = 110.26 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 40 98.5 180289 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.02 88.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1 40 171169 9038 98.3 0.167 0.16566 0.16508 0.1676 0.1766 RANDOM 10.802
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.17 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.003 r_sphericity_free 3.393 r_scangle_it 2.993 r_sphericity_bonded 2.864 r_scbond_it 2.169 r_mcangle_it 1.79 r_angle_refined_deg 1.723 r_rigid_bond_restr 1.21 r_mcbond_it 1.078 r_angle_other_deg 0.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.003 r_sphericity_free 3.393 r_scangle_it 2.993 r_sphericity_bonded 2.864 r_scbond_it 2.169 r_mcangle_it 1.79 r_angle_refined_deg 1.723 r_rigid_bond_restr 1.21 r_mcbond_it 1.078 r_angle_other_deg 0.847 r_chiral_restr 0.45 r_symmetry_vdw_other 0.27 r_nbd_other 0.262 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.175 r_xyhbond_nbd_refined 0.128 r_symmetry_vdw_refined 0.106 r_nbtor_other 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1894 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling