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Crystal Structure of the DH/PH domains of Leukemia-associated RhoGEF in complex with RhoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 277 PEG8K, sodium phosphate, sodium chloride, EDTA, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.3 72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 296.418 α = 90 b = 95.239 β = 94.19 c = 157.338 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 4 mirror 2003-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.069 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 64268 60392 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.3 91.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.22 15 64268 60391 3210 90.39 0.22958 0.22697 0.2287 0.27943 0.2266 RANDOM 42.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.87 2.55 4.3 -11.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.546 r_dihedral_angle_3_deg 20.615 r_dihedral_angle_4_deg 17.918 r_dihedral_angle_1_deg 7.644 r_scangle_it 2.723 r_scbond_it 1.797 r_mcangle_it 1.634 r_angle_refined_deg 1.606 r_mcbond_it 1.17 r_angle_other_deg 0.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.546 r_dihedral_angle_3_deg 20.615 r_dihedral_angle_4_deg 17.918 r_dihedral_angle_1_deg 7.644 r_scangle_it 2.723 r_scbond_it 1.797 r_mcangle_it 1.634 r_angle_refined_deg 1.606 r_mcbond_it 1.17 r_angle_other_deg 0.871 r_nbd_refined 0.245 r_nbtor_refined 0.192 r_nbd_other 0.19 r_symmetry_vdw_other 0.186 r_xyhbond_nbd_refined 0.176 r_symmetry_vdw_refined 0.163 r_symmetry_hbond_refined 0.144 r_mcbond_other 0.122 r_nbtor_other 0.089 r_chiral_restr 0.081 r_xyhbond_nbd_other 0.042 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16961 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing