1X86
Crystal Structure of the DH/PH domains of Leukemia-associated RhoGEF in complex with RhoA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040513 | 3000793 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PH domain-like | 8040514 | 3000134 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PH domain-like | 8040514 | 3000134 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040513 | 3000793 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040513 | 3000793 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040513 | 3000793 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057414 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PH_13_1 | e1x86A3 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_13_1 | ECOD (1.6) |
A | RhoGEF | e1x86A4 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
C | PH_13_1 | e1x86C3 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_13_1 | ECOD (1.6) |
C | RhoGEF | e1x86C4 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
E | PH_13_1 | e1x86E1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_13_1 | ECOD (1.6) |
E | RhoGEF | e1x86E2 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
G | PH_13_1 | e1x86G4 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_13_1 | ECOD (1.6) |
G | RhoGEF | e1x86G3 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
D | Ras | e1x86D1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
F | Ras | e1x86F1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
H | Ras | e1x86H1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
B | Ras | e1x86B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17838 | PH domain (PH_16) | PH domain | - | Domain | |
PF00621 | RhoGEF domain (RhoGEF) | RhoGEF domain | Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that Pfam:PF00169 domains invariably occur C-terminal to RhoGEF/DH domains. | Domain | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041020 | ARHGEF1-like, PH domain | Domain | |
IPR001849 | Pleckstrin homology domain | Domain | |
IPR036305 | RGS domain superfamily | Homologous Superfamily | |
IPR000219 | Dbl homology (DH) domain | Domain | |
IPR037884 | LARG, RGS domain | Domain | |
IPR015212 | Regulator of G protein signalling-like domain | Domain | |
IPR044926 | RGS, subdomain 2 | Homologous Superfamily | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR037801 | ARHGEF12, PH domain | Domain | |
IPR035899 | Dbl homology (DH) domain superfamily | Homologous Superfamily | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR001478 | PDZ domain | Domain | |
IPR001331 | Guanine-nucleotide dissociation stimulator, CDC24, conserved site | Conserved Site | |
IPR001806 | Small GTPase | Family | |
IPR003578 | Small GTPase Rho | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR005225 | Small GTP-binding domain | Domain |