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Crystal Structure of a Hev b 6.02 Isoallergen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q9B PDB ENTRY 1Q9B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 291 MPD, Tris, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.93 35.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.2 α = 90 b = 37.2 β = 90 c = 48.79 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IIC MIRRORS 2002-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 16.27 97.1 0.037 25.2 3.9 4440 4440 25.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 90.5 0.209 4.5 3.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q9B 1.7 16.265 3975 3975 465 100 0.156 0.156 0.152 0.169 0.193 0.2019 RANDOM 16.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.03 0.05 -0.08
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.784 r_dihedral_angle_1_deg 4.465 r_scbond_it 3.234 r_angle_refined_deg 2.396 r_mcangle_it 2.061 r_mcbond_it 1.292 r_angle_other_deg 1.088 r_nbd_other 0.268 r_symmetry_vdw_other 0.236 r_nbd_refined 0.219
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.784 r_dihedral_angle_1_deg 4.465 r_scbond_it 3.234 r_angle_refined_deg 2.396 r_mcangle_it 2.061 r_mcbond_it 1.292 r_angle_other_deg 1.088 r_nbd_other 0.268 r_symmetry_vdw_other 0.236 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.125 r_symmetry_vdw_refined 0.121 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.114 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 321 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction d*TREK data scaling AMoRE phasing