☰ Navigation Tabs
Crystal structure of ribonuclease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG8000, sodium acetate, glycerol, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.38 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.203 α = 90 b = 72.834 β = 90 c = 82.634 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.978 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 99.7 35922
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 99.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 40 34084 1791 99.53 0.2032 0.20178 0.22994 RANDOM 25.094
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.59 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.997 r_scangle_it 3.084 r_scbond_it 1.825 r_mcangle_it 1.295 r_angle_refined_deg 1.119 r_angle_other_deg 0.77 r_mcbond_it 0.669 r_symmetry_vdw_other 0.288 r_nbd_refined 0.239 r_nbd_other 0.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.997 r_scangle_it 3.084 r_scbond_it 1.825 r_mcangle_it 1.295 r_angle_refined_deg 1.119 r_angle_other_deg 0.77 r_mcbond_it 0.669 r_symmetry_vdw_other 0.288 r_nbd_refined 0.239 r_nbd_other 0.221 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.121 r_symmetry_vdw_refined 0.11 r_nbtor_other 0.079 r_chiral_restr 0.062 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2185 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing