☰ Navigation Tabs
Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with benzoyl-L-arginine amide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 PEGMME2000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.83 56.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.133 α = 90 b = 60.045 β = 124.23 c = 115.406 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.9000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 42.52 97.9 0.05 10.3 36718 36718
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 93.5 0.217 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 42.52 32646 32646 3661 97.9 0.21507 0.2148 0.21045 0.2126 0.25211 0.2501 RANDOM 44.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.64 -5.12 7.1 -5.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.11 r_scangle_it 2.777 r_scbond_it 1.681 r_angle_refined_deg 1.593 r_mcangle_it 1.292 r_angle_other_deg 1.013 r_mcbond_it 0.708 r_symmetry_hbond_refined 0.335 r_nbd_other 0.236 r_nbd_refined 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.11 r_scangle_it 2.777 r_scbond_it 1.681 r_angle_refined_deg 1.593 r_mcangle_it 1.292 r_angle_other_deg 1.013 r_mcbond_it 0.708 r_symmetry_hbond_refined 0.335 r_nbd_other 0.236 r_nbd_refined 0.209 r_symmetry_vdw_other 0.209 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.152 r_metal_ion_refined 0.118 r_symmetry_vdw_refined 0.096 r_nbtor_other 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4946 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing