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Crystal structure of tt0168 from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 MES, ammonium sulfate, PEG-MME, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.52 α = 90 b = 101.151 β = 90 c = 176.487 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V 2002-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 0.9840 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48.8 99.3 51688
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 96.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 48.6 46417 5204 100 0.20807 0.2045 0.2034 0.23956 0.2376 RANDOM 22.468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 -0.14 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.422 r_scangle_it 2.258 r_scbond_it 1.217 r_angle_refined_deg 0.96 r_mcangle_it 0.894 r_mcbond_it 0.46 r_symmetry_vdw_refined 0.17 r_nbd_refined 0.169 r_symmetry_hbond_refined 0.103 r_xyhbond_nbd_refined 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.422 r_scangle_it 2.258 r_scbond_it 1.217 r_angle_refined_deg 0.96 r_mcangle_it 0.894 r_mcbond_it 0.46 r_symmetry_vdw_refined 0.17 r_nbd_refined 0.169 r_symmetry_hbond_refined 0.103 r_xyhbond_nbd_refined 0.096 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7751 Nucleic Acid Atoms Solvent Atoms 421 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing