1V25
Crystal structure of tt0168 from Thermus thermophilus HB8
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d1v25b_ | Multi-domain proteins (alpha and beta) | Acetyl-CoA synthetase-like | Acetyl-CoA synthetase-like | Acetyl-CoA synthetase-like | Long chain fatty acid-CoA ligase TT0168 | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
A | d1v25a_ | Multi-domain proteins (alpha and beta) | Acetyl-CoA synthetase-like | Acetyl-CoA synthetase-like | Acetyl-CoA synthetase-like | Long chain fatty acid-CoA ligase TT0168 | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | AMP-binding enzyme-like | 8028750 | 4002922 | SCOP2 (2022-06-29) |
B | SCOP2 Family | AMP-binding enzyme C-terminal domain-like | 8055426 | 4007642 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | AMP-binding enzyme-like | 8041129 | 3001902 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | AMP-binding enzyme C-terminal domain-like | 8055427 | 3002292 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | AMP-binding enzyme-like | 8041129 | 3001902 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | AMP-binding_3rd | e1v25B5 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_3rd | ECOD (1.6) |
B | AMP-binding_C | e1v25B7 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: a+b domain in acetyl-CoA synthetase-like proteins (From Topology) | T: a+b domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_C | ECOD (1.6) |
B | AMP-binding_1st | e1v25B8 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_1st | ECOD (1.6) |
B | AMP-binding_2nd | e1v25B6 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_2nd | ECOD (1.6) |
A | AMP-binding_3rd | e1v25A1 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_3rd | ECOD (1.6) |
A | AMP-binding_C | e1v25A2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: a+b domain in acetyl-CoA synthetase-like proteins (From Topology) | T: a+b domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_C | ECOD (1.6) |
A | AMP-binding_1st | e1v25A3 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_1st | ECOD (1.6) |
A | AMP-binding_2nd | e1v25A4 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.12780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ANL, N-terminal domain | CATH (4.3.0) |
B | 3.30.300.30 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
A | 3.40.50.12780 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | ANL, N-terminal domain | CATH (4.3.0) |
A | 3.30.300.30 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00501 | AMP-binding enzyme (AMP-binding) | AMP-binding enzyme | - | Family | |
PF13193 | AMP-binding enzyme C-terminal domain (AMP-binding_C) | AMP-binding enzyme C-terminal domain | This is a small domain that is found C terminal to Pfam:PF00501. It has a central beta sheet core that is flanked by alpha helices. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020845 | AMP-binding, conserved site | Conserved Site | |
IPR045851 | AMP-binding enzyme, C-terminal domain superfamily | Homologous Superfamily | |
IPR042099 | ANL, N-terminal domain | Homologous Superfamily | |
IPR050237 | ATP-dependent AMP-binding enzyme | Family | |
IPR025110 | AMP-binding enzyme, C-terminal domain | Domain | |
IPR000873 | AMP-dependent synthetase/ligase domain | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
long-chain-fatty-acid-CoA ligase M-CSA #198 | Long chain fatty acid coenzyme-A synthetase (LC-FACS) participates in the first reaction step of long chain fatty acid degradation. These enzymes act on a wide range of long-chain saturated and unsaturated fatty acids, but the enzymes from different tissues and species show some variation in specificity. For example, the liver enzyme acts on acids from C6 to C20, that from brain shows high activity up to C24, and the enzyme from Thermus thermophilus acts on C12 to C22 fatty acids. LC-FACS catalyses the conversion of long chain fatty acids into fatty-acyl-CoA, creating AMP and pyrophosphate as bi-products. LC-FACS is responsible for physiological regulation of cellular functions, as well as fatty acid degradation. | EC: 6.2.1.3 (PDB Primary Data) |