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Xenon COMPLEX OF wildtype P450CAM FROM PSEUDOMONAS PUTIDA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DZ8 PDB ENTRY 1DZ8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 275 CRYSTALS WERE GROWN USING THE SITTING DROP GEOMETRY AT 2 DEG. C. 5 UL OF 30 MG/ML P450 IN 50 MM TRIS HCL, 250 MM KCL, 0.5 MM CAMPHOR WERE MIXED WITH AN EQUAL VOLUME OF THE RESERVOIR SOLUTION (27-30% PEG 4000, 100 MM DTE, SAME BUFFER AS PROTEIN)., pH 7.40
Crystal Properties Matthews coefficient Solvent content 2.14 42.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.2 α = 90 b = 62.3 β = 90.5 c = 95.3 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19 99.7 0.121 9.3 3.82 53282 32.91
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.9 0.483 4.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DZ8 2 19.84 50618 2663 100 0.19 0.187 0.1889 0.236 0.2322 RANDOM 31.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.77 -0.15 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.671 r_scangle_it 3.184 r_scbond_it 1.905 r_angle_refined_deg 1.421 r_mcangle_it 1.237 r_angle_other_deg 0.971 r_mcbond_it 0.637 r_symmetry_vdw_other 0.271 r_nbd_other 0.232 r_symmetry_hbond_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.671 r_scangle_it 3.184 r_scbond_it 1.905 r_angle_refined_deg 1.421 r_mcangle_it 1.237 r_angle_other_deg 0.971 r_mcbond_it 0.637 r_symmetry_vdw_other 0.271 r_nbd_other 0.232 r_symmetry_hbond_refined 0.22 r_nbd_refined 0.217 r_metal_ion_refined 0.2 r_xyhbond_nbd_refined 0.196 r_symmetry_vdw_refined 0.137 r_nbtor_other 0.086 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6406 Nucleic Acid Atoms Solvent Atoms 452 Heterogen Atoms 119
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling