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Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NAE PDB ENTRY 1NAE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 11% PEG 6000, 2.0 M NACL, pH 7.00
Crystal Properties Matthews coefficient Solvent content 3.3 62.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.11 α = 90 b = 66.956 β = 90 c = 85.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 33 98.8 0.055 9.1 4.9 70856
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 97.7 0.189 3.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NAE 1.4 33.52 67276 3577 100 0.162 0.161 0.1706 0.178 0.1857 RANDOM 13.36
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.33 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.413 r_scangle_it 3.418 r_scbond_it 2.188 r_mcangle_it 1.511 r_angle_refined_deg 1.323 r_mcbond_it 0.809 r_angle_other_deg 0.748 r_symmetry_vdw_other 0.324 r_nbd_other 0.263 r_symmetry_hbond_refined 0.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.413 r_scangle_it 3.418 r_scbond_it 2.188 r_mcangle_it 1.511 r_angle_refined_deg 1.323 r_mcbond_it 0.809 r_angle_other_deg 0.748 r_symmetry_vdw_other 0.324 r_nbd_other 0.263 r_symmetry_hbond_refined 0.239 r_xyhbond_nbd_refined 0.19 r_nbd_refined 0.179 r_symmetry_vdw_refined 0.109 r_nbtor_other 0.083 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_other 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1944 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing