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Xyloglucan endotransglycosylase native structure.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 10 MG ML-1 PROTEIN SOLUTION 1:1 WITH 1.0 M NAOAC AND 0.2 M IMIDAZOLE PH 6.5
Crystal Properties Matthews coefficient Solvent content 4 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 188.762 α = 90 b = 188.762 β = 90 c = 45.973 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2002-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25 99.4 0.081 12.4 3.12 106310 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 95.5 0.26 3.7 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.1 24.77 52388 2798 99.9 0.208 0.206 0.2152 0.232 0.2393 RANDOM 36.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.954 r_scangle_it 4.094 r_angle_other_deg 3.93 r_scbond_it 2.513 r_mcangle_it 1.919 r_angle_refined_deg 1.483 r_mcbond_it 1 r_nbd_other 0.283 r_symmetry_vdw_other 0.263 r_xyhbond_nbd_refined 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.954 r_scangle_it 4.094 r_angle_other_deg 3.93 r_scbond_it 2.513 r_mcangle_it 1.919 r_angle_refined_deg 1.483 r_mcbond_it 1 r_nbd_other 0.283 r_symmetry_vdw_other 0.263 r_xyhbond_nbd_refined 0.222 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.139 r_nbtor_other 0.119 r_chiral_restr 0.089 r_symmetry_hbond_refined 0.03 r_bond_refined_d 0.014 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4417 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 79
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling RSPS phasing MLPHARE phasing SHARP phasing