☰ Navigation Tabs
STRUCTURE OF UNCOMPLEXED FAB COMPARED TO COMPLEX (1CLY, 1CLZ)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CLZ FV OF 1CLZ WITH CDRS REMOVED 1CLY (HUMAN IGG1, HUMAN KAPPA) AND OF 1CLZ (MOUSE IGG3, MOUSE KAPPA) experimental model PDB 1CLY FV OF 1CLZ WITH CDRS REMOVED 1CLY (HUMAN IGG1, HUMAN KAPPA) AND OF 1CLZ (MOUSE IGG3, MOUSE KAPPA)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 0.1 M SODIUM ACETATE (PH 4.6), 0.1 M AMMONIUM SULFATE, 15 % PEG 8000.
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.1 α = 90 b = 174.3 β = 90 c = 45.6 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR SIEMENS-NICOLET X100 MIRROR 1993-03-19 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 36 87 0.045 16.1 2 14826
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.8 65 0.107 4 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT EX POST FACTO FV OF 1CLZ WITH CDRS REMOVED 1CLY (HUMAN IGG1, HUMAN KAPPA) AND OF 1CLZ (MOUSE IGG3, MOUSE KAPPA) 2.5 8 1 13731 87 0.2 0.2 0.1829 0.276 29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 28 x_angle_deg 1.6 x_improper_angle_d 1.4 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 28 x_angle_deg 1.6 x_improper_angle_d 1.4 x_bond_d 0.009 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3333 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 45
Software Software Software Name Purpose XDS data scaling XSCALE data scaling BRUTE model building MERLOT phasing X-PLOR refinement XDS data reduction BRUTE phasing