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Structure of MoaA in complex with S-adenosylmethionine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 Na formate, HEPES, DMSO, DTT, S-adenosylemthionine, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.9 57.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.982 α = 90 b = 103.305 β = 90 c = 189.925 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 1.100 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 47193
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 84.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.2 95.35 44700 44700 2399 96.7 0.21423 0.21275 0.2338 0.24113 0.2539 RANDOM 40.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 2.15 -1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.932 r_scangle_it 4.129 r_scbond_it 2.463 r_angle_refined_deg 1.694 r_mcangle_it 1.512 r_angle_other_deg 0.93 r_mcbond_it 0.801 r_symmetry_vdw_other 0.256 r_nbd_other 0.242 r_nbd_refined 0.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.932 r_scangle_it 4.129 r_scbond_it 2.463 r_angle_refined_deg 1.694 r_mcangle_it 1.512 r_angle_other_deg 0.93 r_mcbond_it 0.801 r_symmetry_vdw_other 0.256 r_nbd_other 0.242 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.188 r_symmetry_vdw_refined 0.155 r_chiral_restr 0.107 r_nbtor_other 0.089 r_symmetry_hbond_refined 0.081 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5273 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 104
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling FFT model building REFMAC refinement FFT phasing