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Triosephosphate isomerase from Gallus gallus, loop 6 hinge mutant K174L, T175W
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 1.4M Na-citrate, 0.1M TEA, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.69 54.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.744 α = 90 b = 73.447 β = 90 c = 135.846 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE MARRESEARCH mirrors 1998-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 13.18 62.6 47599 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 23.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1tph 1.71 13.18 40543 2530 79.25 0.19812 0.1965 0.2276 0.2301 RANDOM 7.907
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 -0.58 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.24 r_scangle_it 3.257 r_scbond_it 2.116 r_angle_refined_deg 1.471 r_mcangle_it 1.235 r_angle_other_deg 0.889 r_mcbond_it 0.718 r_symmetry_hbond_refined 0.261 r_nbd_other 0.247 r_symmetry_vdw_other 0.247
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.24 r_scangle_it 3.257 r_scbond_it 2.116 r_angle_refined_deg 1.471 r_mcangle_it 1.235 r_angle_other_deg 0.889 r_mcbond_it 0.718 r_symmetry_hbond_refined 0.261 r_nbd_other 0.247 r_symmetry_vdw_other 0.247 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.186 r_symmetry_vdw_refined 0.154 r_chiral_restr 0.101 r_nbtor_other 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3744 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction CCP4 data scaling AMoRE phasing