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Solution structure of the oxidized form of the Yap1 redox domain
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D_15N-separated_NOESY
0.8 mM U-15N; U-15N & 13C.
10 mM NaPhos, 20 mM NaCL, 10% D2O
20 mM NaCl
6.0
ambient
303
2
4D_13C/15N-separated_NOESY
0.8 mM U-15N; U-15N & 13C.
10 mM NaPhos, 20 mM NaCL, 10% D2O
20 mM NaCl
6.0
ambient
303
3
HNCACB
0.8 mM U-15N; U-15N & 13C.
10 mM NaPhos, 20 mM NaCL, 10% D2O
20 mM NaCl
6.0
ambient
303
4
Experiments for residual dipolar coupling measurements
0.8 mM U-15N; U-15N & 13C.
10 mM NaPhos, 20 mM NaCL, 10% D2O
20 mM NaCl
6.0
ambient
303
5
4D_13C-separated_NOESY
0.8 mM U-15N & 13C.
10 mM NaPhos, 20 mM NaCL, 100% D2O
20 mM NaCl
6.0
ambient
303
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
600
2
Bruker
AVANCE
800
NMR Refinement
Method
Details
Software
distance geometry and simulated annealing
Yap1-RD structures were calculated with 1103 NOE distance restraints, 54 hydrogen bond restraints, 92 dihedral angle restraints and 93 residual dipolar couplings. Residues 279-300 and 565-592 are disordered.
NMRPipe
NMR Ensemble Information
Conformer Selection Criteria
Stuctures with the lowest energy and no NOE or dihedral violations > 0.5 A and 5 degrees, respectively.
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Additional NMR Experimental Information
Details
Residual dipolar couplings (DN-H and DCaH) were measured in a solution composed of PF1 phage.