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Crystal Structure of W139G D-3-Phosphoglycerate dehydrogenase complexed with NAD+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 291 Citrate, PEG 4K, NAD, alpha-ketoglutarate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.37 47.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.487 α = 90 b = 70.842 β = 95.39 c = 149.468 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ANL-ECT 2001-03-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97934, 0.97951, 0.95373 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 40 95.9 0.078 0.063 20.6 172809 104640
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.07 2.15 95.6 0.407 0.436 2 3 3426
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.09 40 104630 17250 95.9 0.22 0.22 0.22 0.225 0.26 0.2629 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.615 -5.052 -1.069 2.684
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.314 c_mcangle_it 2.609 c_scbond_it 2.312 c_mcbond_it 1.589
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11663 Nucleic Acid Atoms Solvent Atoms 463 Heterogen Atoms 176
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling SOLVE phasing DM model building CNS refinement HKL-2000 data reduction DM phasing CNS phasing