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Crystal structure of putative DNA binding protein SP_1288 from Streptococcus pygenes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.2 293 Citric Acid, Ammonium Nitrate, pH 3.2, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 3.19 61.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.608 α = 90 b = 69.685 β = 103.04 c = 55.247 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirrors 2003-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9794 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 38 99.8 0.066 0.066 19 4 40688 40607 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.8 0.336 0.336 4 4 4066
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.31 38.35 19476 19476 1053 98.67 0.2081 0.2081 0.20651 0.2249 0.23686 0.2502 RANDOM 27.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.85 -0.4 2.2 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.007 r_scangle_it 5.005 r_dihedral_angle_1_deg 3.628 r_scbond_it 3.038 r_mcangle_it 1.743 r_angle_refined_deg 1.558 r_mcbond_it 0.86 r_symmetry_hbond_refined 0.335 r_symmetry_vdw_refined 0.313 r_nbd_refined 0.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.007 r_scangle_it 5.005 r_dihedral_angle_1_deg 3.628 r_scbond_it 3.038 r_mcangle_it 1.743 r_angle_refined_deg 1.558 r_mcbond_it 0.86 r_symmetry_hbond_refined 0.335 r_symmetry_vdw_refined 0.313 r_nbd_refined 0.254 r_xyhbond_nbd_refined 0.182 r_chiral_restr 0.1 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2691 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection HKL-2000 data scaling SOLVE phasing