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MYCOBACTERIUM TUBERCULOSIS FTSZ IN COMPLEX WITH CITRATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FSZ PDB ENTRY 1FSZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 293 30% PEG 4000, 0.1M SODIUM CITRATE, 0.2M AMMONIUM ACETATE, 2MM SRI-7614, ETHYL (6-AMINO-2,3-DIHYDRO-4-PHENYL-1H-PYRIDO[4,3-B][1,4]DIAZEPIN-8-YL)-CARBAMATE, WAS INCLUDED AS WELL, BUT WAS NOT LOCATED IN THE FINAL STRUCTURE, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.58 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.116 α = 90 b = 88.116 β = 90 c = 176.807 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 1 MIRRORS/MONOCHROMATOR 2000-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 30 0.061 0.061 11.4 3.5 68271 25.68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.93 99.1 0.409 0.409 1.3 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FSZ 1.86 30 64447 61177 3267 99.17 0.18887 0.18707 0.1855 0.22169 0.2192 RANDOM 28.217
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.2
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.734 r_dihedral_angle_1_deg 5.2 r_scbond_it 3.199 r_mcangle_it 1.975 r_angle_refined_deg 1.448 r_mcbond_it 1.064 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.213 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.141
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.734 r_dihedral_angle_1_deg 5.2 r_scbond_it 3.199 r_mcangle_it 1.975 r_angle_refined_deg 1.448 r_mcbond_it 1.064 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.213 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4271 Nucleic Acid Atoms Solvent Atoms 316 Heterogen Atoms 13
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling TRUNCATE data reduction EPMR phasing REFMAC refinement X-PLOR refinement CCP4 data scaling TRUNCATE data scaling