1RGW
Solution Structure of ZASP's PDZ domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1 mM ZASP-PDZ, 20 mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | No added salt | 6.6 | ambient | 300 | |
2 | 3D_15N-separated_NOESY | 1 mM ZASP-PDZ, 20 mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | No added salt | 6.6 | ambient | 300 | |
3 | 2D NOESY | 1 mM ZASP-PDZ, 20 mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | No added salt | 6.6 | ambient | 300 | |
4 | 2D TOCSY | 1 mM ZASP-PDZ, 20 mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | No added salt | 6.6 | ambient | 300 | |
5 | HCCH-TOCSY | 1 mM ZASP-PDZ, 20 mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | No added salt | 6.6 | ambient | 300 | |
6 | 3D_15N-separated_TOCSY | 1 mM ZASP-PDZ, 20 mM sodium phosphate buffer, 0.02% sodium azide, 90% H2O, 10% D2O | 90% H2O/10% D2O | No added salt | 6.6 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 600 |
3 | Varian | UNITY | 600 |
4 | Varian | UNITY | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing molecular dynamics torsion angle dynamics | 853 NOE-derived restaints from assigned from CANDID/CYANA. 7 directly observed hydrogen bonds. 97 dihedral angle restraints (from HNHA and TALOS). | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance NMR spectroscopy. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.851 | Brunger |
2 | structure solution | DYANA | CYANA 1.0.6 | Guentert |