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Crystal Structure of Fosfomycin Resistance Protein FosX from Mesorhizobium Loti
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LQP PDB entry 1LQP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 PEG8000, Tris, Li2SO4, MnCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.95 36.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.034 α = 90 b = 84.024 β = 90 c = 66.861 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV mirrors 2002-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 30 91.1 0.077 17.9 3.8 21017 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.9 55.8 0.414 1.9 2.6 1263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1LQP 1.83 30 21034 18860 1391 87.83 0.2046 0.2046 0.20179 0.2029 0.24307 0.2435 RANDOM 26.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.94 3.23 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.293 r_scangle_it 3.769 r_scbond_it 2.537 r_mcangle_it 1.426 r_angle_refined_deg 1.363 r_mcbond_it 0.788 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.293 r_scangle_it 3.769 r_scbond_it 2.537 r_mcangle_it 1.426 r_angle_refined_deg 1.363 r_mcbond_it 0.788 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.144 r_symmetry_hbond_refined 0.108 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1950 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing