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HUMAN ADENOVIRUS SEROTYPE 2 FIBRE HEAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KNB PDB ENTRY 1KNB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 100 MM SODIUM ACETATE 25 % (V/V) GLYCEROL 1-1.5 M AMMONIUM SULPHATE PH 4.0
WITH ACETIC ACID
Crystal Properties Matthews coefficient Solvent content 2.96 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.35 α = 90 b = 95.35 β = 90 c = 48.8 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1997-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID2 ESRF ID2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 10.97 91.8 0.073 7.3 4.7 36820 13.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.59 55.3 0.172 3.6 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KNB 1.51 10.97 35701 1119 91.8 0.109 0.143 0.1677 RANDOM 23.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.7 p_staggered_tor 11.6 p_scangle_it 10.864 p_scbond_it 9.208 p_mcangle_it 6.892 p_mcbond_it 5.846 p_planar_tor 4.9 p_xhyhbond_nbd 0.3 p_multtor_nbd 0.263 p_singtor_nbd 0.176
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 30.7 p_staggered_tor 11.6 p_scangle_it 10.864 p_scbond_it 9.208 p_mcangle_it 6.892 p_mcbond_it 5.846 p_planar_tor 4.9 p_xhyhbond_nbd 0.3 p_multtor_nbd 0.263 p_singtor_nbd 0.176 p_xyhbond_nbd 0.112 p_chiral_restr 0.105 p_plane_restr 0.0264 p_hb_or_metal_coord 0.02 p_bond_d 0.016 p_planar_d 0.015 p_angle_d 0.014 p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1508 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 10
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction CCP4 data scaling