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CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) FROM HAEMOPHILUS INFLUENZAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P74 PDB ENTRY 1P74
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.8 298 12% PEG 8000, 0.15 M Ca Acetate, 0.1 M Imidazole, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.4 48.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.054 α = 90 b = 82.728 β = 90 c = 82.365 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.1 0.133 0.133 9.8 3.6 21069 21069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 92 0.525 0.525 2 3.6 1908
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1P74 1.95 20 19949 1080 100 0.20494 0.20278 0.24441 RANDOM 10.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 -0.41 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.979 r_dihedral_angle_1_deg 5.291 r_angle_refined_deg 1.967 r_scangle_it 1.473 r_scbond_it 0.891 r_symmetry_hbond_refined 0.598 r_mcangle_it 0.49 r_nbd_refined 0.25 r_mcbond_it 0.241 r_xyhbond_nbd_refined 0.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 14.979 r_dihedral_angle_1_deg 5.291 r_angle_refined_deg 1.967 r_scangle_it 1.473 r_scbond_it 0.891 r_symmetry_hbond_refined 0.598 r_mcangle_it 0.49 r_nbd_refined 0.25 r_mcbond_it 0.241 r_xyhbond_nbd_refined 0.229 r_chiral_restr 0.226 r_symmetry_vdw_refined 0.2 r_bond_refined_d 0.016 r_gen_planes_refined 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2055 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing