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Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 291 PEG 3350, PEG 400, Tris, NaI, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.43 49.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.094 α = 90 b = 148.776 β = 90 c = 176.71 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-09-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 45 95.3 0.078 12.2 94192 94192 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 95.5 0.35 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.95 20 1 83301 83301 4465 100 0.19075 0.18811 0.2021 0.23976 0.249 RANDOM 20.983
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.507 r_scangle_it 13.156 r_scbond_it 10.082 r_mcangle_it 6.609 r_mcbond_it 4.712 r_dihedral_angle_1_deg 3.437 r_angle_other_deg 1.275 r_angle_refined_deg 1.25 r_nbtor_other 1.075 r_symmetry_vdw_refined 0.374
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.507 r_scangle_it 13.156 r_scbond_it 10.082 r_mcangle_it 6.609 r_mcbond_it 4.712 r_dihedral_angle_1_deg 3.437 r_angle_other_deg 1.275 r_angle_refined_deg 1.25 r_nbtor_other 1.075 r_symmetry_vdw_refined 0.374 r_nbd_refined 0.337 r_xyhbond_nbd_other 0.33 r_symmetry_hbond_refined 0.323 r_nbd_other 0.3 r_symmetry_vdw_other 0.297 r_xyhbond_nbd_refined 0.284 r_chiral_restr 0.109 r_metal_ion_refined 0.033 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_bond_other_d r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7932 Nucleic Acid Atoms Solvent Atoms 853 Heterogen Atoms 134
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing